This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AQLG.1

Bahamas/LOC_001AQLG.1/2025-01-01

Sample details

Collection date
2025-01-01
Earliest release date
2026-06-29
Sampling location
Bahamas

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-29 15:43superuserOPEN
Data use terms URL

Submission details

Submission ID
Test
Submitting group
Date submitted
2026-06-29 15:43:33 UTC
Date released
2026-06-29 15:51:09 UTC

Files

Annotations
Raw reads

Alignment and QC

Total SNPs L
1442
Total inserted nucs L
23
Total deleted nucs L
3
Total unknown nucs L
342
Length L
12094 (96.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G32A
  • A35G
  • T49C
  • T61C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • G119A
  • A124G
  • T131A
  • C136T
  • T139C
Deletions

L

12028-12030
Insertions

L

ins_58:T, ins_11925:GT, ins_12081:TTTAATATCCAACTACTCCA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:G15S
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:T163A
  • RdRp:M172V
  • RdRp:S205P
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:K522R
  • RdRp:T720S
Deletions
N/A
Insertions
N/A

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